These peanut butter protein cookies are hands down the best protein cookie I’ve made to date. They’re melt-in-your-mouth soft and have an amazing balance of chocolate chips and peanut butter flavor.
The recipe includes two variations for all purpose and almond flour, with both versions have around 140 calories, 10 grams of protein, and 3 Smart Points per cookie. I’ll run through the ingredients and questions about modifying your peanut butter protein cookies below before you get to the printable recipe card.

Ingredients for Peanut Butter Protein Cookies
Protein baking is tough so I’d highly recommend using the ingredients as called for, if possible. I do my best to make recipes with a handful of staple ingredients. So if you want to do more baking with protein powder, you can find tons of recipes on my blog with the ingredients in this recipe.
Protein Powder
These peanut butter protein cookies call for PEScience Select Whey + Casein. I always like to mention, weighing your ingredients is highly recommend with baked goods. Protein powder and flour can vary wildly from one scoop or cup to another. Using a food scale ensures you’re using the correct amount.
If you’re a fan of my recipes, using the same ingredients makes life much easier. You can use my affiliate discount code mason to take 15% off PEScience products if you want to give it a try!
If you’re using a whey-only protein powder, you may need to modify the amount as casein is a bit thicker. My biggest tip for using another protein powder would be adding the final wet ingredient (apple sauce) one tablespoon at a time. You may not need the full amount to hydrate your cookie dough.

All Purpose or Almond Flour
If you need a lower carb, gluten free peanut butter protein cookie, the almond flour will be the way to go. I couldn’t tell much difference between the two versions of this recipe. The almond flour cookies might be slightly softer (in a good way).
You can substitute one for one with either flour for your protein cookies. This isn’t always the case with these two but more often that not, they’re close to a one to one swap.
Swerve Brown Sugar
Swerve is a non-glycemic, zero-calorie sweetener made from erythritol. The nutrition facts include the carb content from the label but no calories. If you use real brown sugar in its place, the carb content should remain the same, but the calories and Smart Point totals will increase a bit.

Peanut Butter and Apple Sauce
The apple sauce in these protein cookies serves as a lower calorie fat replacement. Instead of using another 1/4 cup of peanut butter (about 400 calories worth), the apple sauce keeps the cookies soft and only adds about 25 calories.
If you’re thinking about using powdered peanut butter to reduce the fat content, you’re welcome to try it. But I wouldn’t cut too much fat from the cookies or they’ll be tough and dry. I used powdered peanut butter in my peanut butter chocolate chip protein cookies but used light butter and canned pumpkin (a substitute for apple sauce) to keep them soft.

And in case you’re wondering, these peanut butter protein cookies blow the other cookies out of the water.
White Chocolate Chips
Feel free to use any chocolate chips you’d like for your protein cookies. And if you wanted extra chocolatey cookies, add a tablespoon or two extra.

I think that’s about it for ingredients. If you have more substitution questions, drop a comment below.
Final Notes for Peanut Butter Protein Cookies
One of the most important tips I can give for protein powder baking, other than using a food scale to weigh ingredients, is to under bake. If you see a bake time range, always start with the lower end. And if it’s your first time making a recipe, keep an eye on it during baking.

Okay, you’re ready to bake! If you try these peanut butter protein cookies, snap a photo and tag me on the ‘gram or share it in my free Facebook group.

White Chocolate Peanut Butter Protein Cookies
Ingredients
- 2 scoops, 62g PEScience Select Protein Powder, vanilla
- 1/4 C 30g All Purpose Flour, or equal parts almond flour
- 1/4 C 48g Swerve Brown Sugar
- 1/2 tsp Baking Powder
- 6 Tbsp 99g Creamy Peanut Butter
- 1/4 C 60g Unsweetened Apple Sauce
- 2 tsp Vanilla Extract
- 2 Tbsp 28g White Chocolate Chips
Instructions
- Preheat oven to 350F.
- Mix the dry ingredients, making sure to break any brown sugar lumps down, before adding the peanut butter, apple sauce, and vanilla extract. Stir until a dough begins to form.
- Fold the chocolate chips into the dough.
- Divide the dough into 8 pieces and press each between your palms to flatten. (Spray your hands with cooking spray to prevent sticking.) Place the cookies on the baking sheet.
- Bake for 6-8 minutes until the bottoms begin to slightly brown around the edges and the tops are still slightly soft in the center.
Notes
- Per cookie with almond flour: 145 calories, 10g of protein, 13g of carbs, and 9g of fat
- Both versions have 3 Smart Points per cookie.
- For other ingredient modification notes, see post above.





Dangerously addictive! They disappear faster than I can make them. I have to give them away so I don’t eat them all!
Dangerously addictive! They disappear faster than I can make them. I have to give them away so I don’t eat them all!
The best cookie ever!! Absolutely delicious🤤 I’ve made them using stevia instead of the swerve and they were pretty dang good but they are better with the brown sugar swerve. Plus they are super easy to make.
The best cookie ever!! Absolutely delicious🤤 I’ve made them using stevia instead of the swerve and they were pretty dang good but they are better with the brown sugar swerve. Plus they are super easy to make.
made these but used vanilla protein powder and added cinnamon to it to make them more of a snickerdoodle flavor 😛 10-10 for me 😋😋
I made these using unicorn white chocolate chips I found at Walmart. It was the perfect salty sweet snack. It was so good that my husband ate four out of the six cookies I made, which says a lot because he’s not too keen on the “healthier” recipes type thing. These are a must make if you like sweet & savory!
All I have to say is that if you haven’t made these you should be ashamed of yourself. Only modification I made was using PBfit instead of regular peanut butter. These are insanely good!!
I used almond flour and they turned out so good! Highly recommend!
I used this recipe as a base to try some combinations of diff flavors, and it’s the most similar to the real thing than any other recipe I’ve tried. I do 1 serving each time versus a batch, but the applesauce is absolutely key! My fav combo is light butter instead of pb, and add in some slivered almonds, almond extract and butter extract.
I love this recipe! The cookies were my favorite for a long time, but now I just eat the dough! I love cookie dough and finding a good protein one was hard, so one day I left out the baking powder of this one and never looked back! I just make the dough and then add however many mini chocolate chips i want to, each time I eat it! So good and saves time on baking!